HRM method for identification of TP53 exon 5 and 8 mutations in human prostate cancer patients

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Özet

Background: The purpose of the present study was to perform a high-resolution melting (HRM) analysis to discover mutations in gene exons 5–8 of tumor protein p53 (TP53), as well as the relationships of these mutations to clinical parameters in prostate cancer (PC). Methods: Genomic DNA was extracted from 50 formalin-fixed paraffin-embedded (FFPE) tissues with PC. Mutations in exons 5 and 8 of TP53 were analyzed using the HRM method. Sanger sequencing was used to describe mutations. Results: According to the HRM analysis results, 21 (42%) PC samples had different normalized and shifted melting curves from other samples. Mutations in TP53 exons 5 and8 were observed in 12 (24%) patients by the Sanger method. The detection sensitivity of the HRM method in exon 5 and exon 8 mutations was 66.7% and 50%, respectively. PSA levels of PC patients with TP53 mutation were found to be lower than that of patients with no mutation (p = 0.8270). However, we did not find any correlations between TP53 mutations and clinical parameters (p > 0.05). Conclusions: HRM analysis is a simple, rapid, and efficient mutation-scanning method for known/unknown mutations in TP53 exons 5and8, as well as an attractive method for detection of mutations and their analysis in FFPE tissues. Additional studies with larger patient populations are warranted to confirm the correlation between the TP53 mutations and PC risk.

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https://rdlopen.rawdatalibrary.net/r/bayburt/12108Resmi atıflarda kullanılan kalıcı adres
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https://doi.org/10.1016/j.mgene.2022.101020Yayıncı resmi DOI adresi
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AlanDeğerDil
dc.contributor.authorÖzmerdiven, Çağdaş Gökhun
dc.contributor.authorDirican, Ebubekir
dc.contributor.authorAyan, Semih
dc.contributor.authorTatar, Zeynep
dc.contributor.authorÇakır, Sami
dc.contributor.authorGüler, Yavuz
dc.contributor.authorKaradağ, Abdullah
dc.contributor.authorSoydaş, Tuğba
dc.contributor.authorUzunçakmak, Sevgi Karabulut
dc.contributor.authorAru, Melek
dc.contributor.authorKanigur, Gönül
dc.contributor.authorİlvan, Ahmet
dc.date.accessioned2026-10-29T19:09:11.758495368Z
dc.date.available2026-10-29T19:09:11.758495368Z
dc.date.issued2022
dc.description.abstractBackground: The purpose of the present study was to perform a high-resolution melting (HRM) analysis to discover mutations in gene exons 5–8 of tumor protein p53 (TP53), as well as the relationships of these mutations to clinical parameters in prostate cancer (PC). Methods: Genomic DNA was extracted from 50 formalin-fixed paraffin-embedded (FFPE) tissues with PC. Mutations in exons 5 and 8 of TP53 were analyzed using the HRM method. Sanger sequencing was used to describe mutations. Results: According to the HRM analysis results, 21 (42%) PC samples had different normalized and shifted melting curves from other samples. Mutations in TP53 exons 5 and8 were observed in 12 (24%) patients by the Sanger method. The detection sensitivity of the HRM method in exon 5 and exon 8 mutations was 66.7% and 50%, respectively. PSA levels of PC patients with TP53 mutation were found to be lower than that of patients with no mutation (p = 0.8270). However, we did not find any correlations between TP53 mutations and clinical parameters (p > 0.05). Conclusions: HRM analysis is a simple, rapid, and efficient mutation-scanning method for known/unknown mutations in TP53 exons 5and8, as well as an attractive method for detection of mutations and their analysis in FFPE tissues. Additional studies with larger patient populations are warranted to confirm the correlation between the TP53 mutations and PC risk.
dc.description.sponsorshipIstanbul Aydın University
dc.description.sponsorshipBilimsel Araştırma Projeleri Birimi, İstanbul Teknik Üniversitesi, BAP
dc.identifier.articlenumber101020
dc.identifier.doi10.1016/j.mgene.2022.101020
dc.identifier.eissn2214-5400
dc.identifier.issn2214-5400
dc.identifier.scopus2-s2.0-85149372538
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/bayburt/12108
dc.identifier.volume31
dc.identifier.wosWOS:000792756700012
dc.language.isoen
dc.publisherElsevier B.V.
dc.relation.ispartofMeta Gene
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectFFPE
dc.subjectHRM
dc.subjectPCR
dc.subjectProstate cancer
dc.subjectSanger
dc.subjectTP53
dc.subject.classificationGenetics & Heredity
dc.subject.othergenomic DNA
dc.subject.otherprotein p53
dc.subject.otheradult
dc.subject.otheraged
dc.subject.otherArticle
dc.subject.othercancer tissue
dc.subject.otherclinical article
dc.subject.otherexon
dc.subject.othergene mutation
dc.subject.otherhigh resolution melting analysis
dc.subject.otherhuman
dc.subject.otherhuman tissue
dc.subject.othermale
dc.subject.otherprostate cancer
dc.subject.otherretrospective study
dc.subject.otherSanger sequencing
dc.titleHRM method for identification of TP53 exon 5 and 8 mutations in human prostate cancer patients
dc.typeArticle
rdl.citation.openalex0
rdl.citation.scopus0
rdl.citation.wos0
rdl.oa.statusclosed
rdl.oa.statusgreen
rdl.oa.urlhttp://hdl.handle.net/20.500.12403/3373
rdl.scopus.quartileQ4
rdl.sdgSDG03
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.wos.indexEmerging Sources Citation Index (ESCI)